Lacey MR, Baribault C, Ehrlich M. Modeling, Simulation and Analysis of Methylation Profiles from Reduced Representation Bisulfite Sequencing Experiments. Statistical Applications in Genetics and Molecular Biology. 2013 Dec 1;12(6):723-42.

Ehrlich M, Lacey M. DNA methylation and differentiation: silencing, upregulation and modulation of gene expression. Epigenomics. 2013 Oct;5(5):553-68.

Rider MA, Zou J, Vanlandingham D, Nuckols JT, Higgs S, Zhang Q, Lacey M, Kim J, Wang G, Hong YS. Quantitative proteomic analysis of the Anopheles gambiae (Diptera: Culicidae) midgut infected with o'nyong-nyong virus. Journal of Medical Entomology. 2013 Sep; 50(5):1077-88.

Tsumagari K, Baribault C, Terragni J, Chandra S, Renshaw C, Sun Z, Song L, Crawford GE, Pradhan S, Lacey M, Ehrlich M. DNA methylation and differentiation: HOX genes in muscle cells. Epigenetics & Chromatin. 2013 Aug 2;6(1):25.

Strong MJ, Xu G, Coco J, Baribault C, Vinay DS, Lacey MR, Strong AL, Lehman TA, Seddon MB, Lin Z, Concha M, Baddoo M, Ferris M, Swan KF, Sullivan DE, Burow ME, Taylor CM, Flemington EK. Differences in Gastric Carcinoma Microenvironment Stratify According to EBV Infection Intensity: Implications for Possible Immune Adjuvant Therapy. PLoS Pathogens. 2013 May; 9(5):e1003341.

Russell KC, Tucker HA, Bunnell BA, Andreeff M, Schober W, Gaynor AS, Strickler KL, Lin S, Lacey MR, O'Connor KC. Cell-Surface Expression of Neuron-Glial Antigen 2 (NG2)and Melanoma Cell Adhesion Molecule (CD146) in Heterogeneous Cultures of Marrow-Derived Mesenchymal Stem Cells. Tissue Engineering Part A. 2013 Oct;19(19-20):2253-66.

Brumlik MJ, Pandeswara S, Ludwig SM, Jeansonne DP, Lacey MR, Murthy K, Daniel BJ, Wang RF, Thibodeaux SR, Church KM, Hurez V, Kious MJ, Zhang B, Alagbala A, Xia X, Curiel TJ. TgMAPK1 is a Toxoplasma gondii MAP kinase that hijacks host MKK3 signals to regulate virulence and interferon-γ-mediated nitric oxide production. Experimental Parasitology. 2013 Jul;134(3):389-99.

Tsumagari K, Baribault C, Terragni J, Varley KE, Gertz J, Pradhan S, Badoo M, Crain CM, Song L, Crawford GE, Myers RM, Lacey M, Ehrlich M. Early de novo DNA methylation and prolonged demethylation in the muscle lineage. Epigenetics. 2013 Feb 15;8(3): 317-32.

Stolier A, Stone JC, Moroz K, Hanemann CW, McNabb L, Jones SD, Lacey M. A comparison of clinical and pathologic assessments for the prediction of occult nipple involvement in nipple-sparing mastectomies. Annals of Surgical Oncology. 2013 Jan;20(1):128-32.

Lacey M and Ehrlich M. DNA hypomethylation and hemimethylation in cancer in Adam Karpf (ed.), Advances in Experimental Medicine and Biology: Epigenetic Alterations in Oncogenesis. 2013; 754: 31-56. Springer: New York.

Ehrlich M and Lacey M. Deciphering transcription dysregulation in FSH muscular dystrophy. Journal of Human Genetics. 2012 Aug; 57(8):477-84.

Wang G, Ma P, Zhang Q, Lewis J, Lacey M, Furukawa Y, O'Reilly SE, Meaux S, McLachlan J, Zhang S. Endocrine disrupting chemicals in New Orleans surface waters and Mississippi Sound sediments. Journal of Environmental Monitoring. 2012 May; 14(5):1353-64.

Chang F, Lacey MR, Bouljihad M, Bentrup KH, Fortgang IS. Tumor necrosis factor receptor 1 functions as a tumor suppressor. American Journal of Physiology: Gastrointestinal and Liver Physiology. 2012 Jan; 302(2):G195-206.

Tsumagari K, Chang SC, Lacey M, Baribault C, Chittur SV, Sowden J, Tawil R, Crawford GE, Ehrlich M. Gene expression during normal and FSHD myogenesis BMC Medical Genomics. 2011 Sep 27; 4:67.

Russell KC, Lacey MR, Gilliam JK, Tucker HA, Phinney DG, O'Connor KC. Clonal analysis of the proliferation potential of human bone marrow mesenchymal stem cells as a function of potency. Biotechnology and Bioengineering 2011; Nov; 108(11): 2716-26.

Chakravarty G, Moroz K, Makridakis NM, Lloyd SA, Galvez SE, Canavello PR, Lacey MR, Agrawal K, Mondal D. Prognostic significance of cytoplasmic SOX9 in invasive ductal carcinoma and metastatic breast cancer. Experimental Biology and Medicine 2011; 236(2):145-55.

Xu G, Fewell C, Taylor C, Deng N, Hedges D, Wang X, Zhang K, Lacey M, Zhang H, Yin Q, Cameron J, Lin Z, Zhu D, Flemington EK. Transcriptome and targetome analysis in MIR155 expressing cells using RNA-seq. RNA 2010;16(8):1610-22.

Dutta NK, Mehra S, Didier PJ, Roy CJ, Doyle LA, Alvarez X, Ratterree M, Be NA, Lamichhane G, Jain SK, Lacey MR, Lackner AA, Kaushal D. Genetic requirements for the survival of tubercle bacilli in primates. Journal of Infectious Diseases 2010; 201(11):1743-5.

Weiner GM, Lacey MR, Mackenzie L, Shah DP, Frangos SG, Grady MS, Kofke A, Levine J, Schuster J, Le Roux PD. Decompressive craniectomy for elevated intracranial pressure and its effect on the cumulative ischemic burden and therapeutic intensity levels after severe traumatic brain injury. Neurosurgery 2010; 66(6):1111-8.

Russell KC, Phinney DG, Lacey MR, Barrilleaux BL, Meyertholen KE, O'Connor KC. In vitro high-capacity assay to quantify the clonal heterogeneity in trilineage potential of mesenchymal stem cells reveals a complex hierarchy of lineage commitment. Stem Cells 2010; 28(4):788-98.

Zimmermann MC, Tilghman SL, Boue SM, Salvo VA, Elliott S, Williams KY, Skripnikova EV, Ashe H, Payton-Stewart F, Vanhoy-Rhodes L, Fonseca JP, Corbitt C, Collins-Burow BM, Howell MH, Lacey M, Shih BY, Carter-Wientjes C, Cleveland TE, McLachlan JA, Wiese TE, Beckman BS, Burow ME. Glyceollin I, a novel antiestrogenic phytoalexin isolated from activated soy. Journal of Pharmacology and Experimental Therapeutics 2010; 332(1):35-45.

Rhodes LV, Muir SE, Elliott S, Guillot LM, Antoon JW, Penfornis P, Tilghman SL, Salvo VA, Fonseca JP, Lacey MR, Beckman BS, McLachlan JA, Rowan BG, Pochampally R, Burow ME.  Adult human mesenchymal stem cells enhance breast tumorigenesis and promote hormone independence. Breast Cancer Research and Treatment 2010; 121(2), 293-300.

Lacey MR, Ehrlich M Modeling dependence in methylation patterns with application to ovarian carcinomas. Statistical Applications in Genetics and Molecular Biology, 2009; 8(1), Article 40.

Shao C, Lacey M, Dubeau L, Ehrlich M. Hemimethylation footprints of DNA demethylation in cancer. Epigenetics 2009; 4(3): 165-75.

Lacey MR, Calmes JM. A Sharp Error Probability Estimate for the Reconstruction of Phylogenetic Quartets by the Four-Point Method. Journal of Computational Biology 2009; 16(3): 443-456.

Pardo RI, Lacey MR. The Real Student-Loan Scandal: Undue Hardship Discharge Litigation. American Bankruptcy Law Journal 2009; 83(1).

Yin Q, McBride J, Fewell C, Lacey M, Wang X, Lin Z, Cameron J, Flemington EK. microRNA-155 is an Epstein-Barr Virus induced gene that modulates Epstein Barr virus regulated gene expression pathways. Journal of Virology 2008; 82(11): 5295-5306.

Tsumagari K, Qi L, Jackson K, Shao C, Lacey M, Sowden J, Tawil R, Vedanarayanan V, Ehrlich M. Epigenetics of a tandem DNA repeat: chromatin DNaseI sensitivity and opposite methylation changes in cancers. Nucleic Acids Research 2008; 36(7):2196-2207.

Cameron JE, Yin Q, Fewell C, Lacey M, McBride J, Wang X, Lin Z, Schaefer BC, Flemington EK. The Epstein-Barr Virus latent membrane protein 1 (LMP1) induces cellular microRNA-146a, a modulator of lymphocyte signaling pathways. Journal of Virology 2008; 82(4):1946-58

Lacey MR, Brumlik MJ, Yenni RE, Burow ME, Curiel TJ. Toxoplasma gondii expresses two mitogen-activated protein kinase genes that represent distinct protozoan subfamilies. Journal of Molecular Evolution 2007; 64(1): 4-14.

Lacey MR, Chang JT. A signal-to-noise analysis of phylogeny estimation by Neighbor-Joining: Insufficiency of polynomial length sequences. Mathematical Biosciences 2006; 199(2): 188-215.

Kriegel AM, Blake DA, El-Ghawalby N, Ezzat F, Soultan A, Abdel-Wahab M, Fathy O, Ebidi G, Bassiouni N, Zhang Q, Hamilton SR, Abbruzzese JL, Lacey MR, Soliman AS.  Serum cadmium levels in pancreatic cancer patients from the East Nile Delta region of Egypt. Environmental Health Perspectives 2006; 114(1): 113-119.

Pardo RI, Lacey MR. Undue Hardship in the Bankruptcy Courts:  An Empirical Assessment of the Discharge of Educational Debt. University of Cincinnati Law Review 2005; 74(2).

Nishiyama R, Qi L, Lacey M, Ehrlich M. Both hypomethylation and hypermethylation in a 0.2-kb region of a DNA repeat in cancer. Molecular Cancer Research 2005; 3(11): 617-26.

Brumlik MJ, Wei S, Finstad K, Nesbit J, Hyman L, Lacey M, Burow ME, Curiel TJ.  Identification of a novel mitogen-activated protein kinase in Toxoplasma gondii. International Journal for Parasitology 2004; 34(11): 1245-1254.

Roth ME, Feng L, McConnell KJ, Schaffer PJ, Guerra CE, Affourtit JP, Piper KR, Guccione L, Hariharan J, Ford MJ, Powell SW, Krishnaswamy H, Lane J, Guccione L, Intrieri G, Merkel, JS, Perbost C, Valerio A, Zolla B, Graham CD, Hnath J, Michaelson C, Wang R, Ying B, Halling C, Parman CE, Raha D, Orr B, Jedrzkiewicz B, Liao J, Tevelev A, Mattessich MJ, Kranz DM, Lacey M, Kaufman JM, Kim J, Latimer DR, Lizardi P. Expression Profiling Using a Novel Universal Microarray.  Nature Biotechnology 2004; 22:418-426.

Weitzel JM, Hamann S, Jauk M, Lacey M, Filbry A, Radtke C, Iwen KAH, Kutz S, Harneit A, Lizardi P, Seize HJ. Hepatic gene expression patterns in thyroid hormone-treated hypothyroid rats. Journal of Molecular Endocrinology 2003; 31(2): 291-303.

Lage J, Leamon J, Pejovic T, Hamann S, Lacey M, Dillon D, Segraves R, Vossbrinck B, Gonzalez A, Pinkel D, Albertson D, Costa J, Lizardi P. Whole genome analysis of genetic alterations in small DNA samples using hyperbranched strand displacement amplification and array-CGH. Genome Research 2003; 13:294-307.